STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_1019KEGG: fra:Francci3_2698 hypothetical protein. (288 aa)    
Predicted Functional Partners:
Sare_4869
PFAM: protein of unknown function DUF397; KEGG: stp:Strop_4378 protein of unknown function DUF397.
  
     0.710
Sare_1962
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: sma:SAP1p37 putative DNA-binding protein.
  
     0.599
Sare_2450
PFAM: UbiC transcription regulator-associated domain protein; KEGG: stp:Strop_2328 UbiC transcription regulator-associated domain protein.
  
    0.596
Sare_0042
PFAM: protein of unknown function DUF397; KEGG: stp:Strop_0037 protein of unknown function DUF397.
  
     0.586
Sare_1018
Hypothetical protein.
       0.570
Sare_3856
PFAM: protein of unknown function DUF397; KEGG: stp:Strop_3476 protein of unknown function DUF397.
  
     0.522
Sare_1728
PFAM: protein of unknown function DUF397; KEGG: stp:Strop_1745 protein of unknown function DUF397.
  
     0.515
Sare_3236
PFAM: protein of unknown function DUF397; KEGG: stp:Strop_1416 protein of unknown function DUF397.
  
     0.494
Sare_1959
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: sco:SCO4399 hypothetical protein.
  
     0.491
Sare_4908
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: stp:Strop_0840 helix-turn-helix domain protein.
  
     0.487
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.