STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_1037Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: stp:Strop_1167 regulatory protein, TetR. (226 aa)    
Predicted Functional Partners:
Sare_0104
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: mjl:Mjls_1498 transcriptional regulator, TetR family.
  
     0.700
Sare_0638
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: stp:Strop_0664 transcriptional regulator, TetR family.
  
     0.597
Sare_0183
PFAM: Abortive infection protein; KEGG: stp:Strop_0170 abortive infection protein.
  
     0.532
Sare_3280
PFAM: Lantibiotic dehydratase domain protein; KEGG: stp:Strop_3054 lantibiotic dehydratase domain protein.
  
     0.531
Sare_4606
Transcriptional regulator, winged helix family; PFAM: transcriptional regulator domain protein; transcriptional activator domain; Tetratricopeptide TPR_4; KEGG: stp:Strop_0492 transcriptional regulator, winged helix family.
  
   
 0.529
Sare_4897
KEGG: stp:Strop_4422 hypothetical protein.
  
     0.518
Sare_3272
PFAM: Lantibiotic dehydratase domain protein; KEGG: stp:Strop_3046 lantibiotic dehydratase domain protein.
  
     0.506
Sare_2214
KEGG: stp:Strop_2071 hypothetical protein.
  
   
 0.494
Sare_3274
PFAM: Lantibiotic dehydratase domain protein; KEGG: stp:Strop_3048 lantibiotic dehydratase domain protein.
  
     0.480
Sare_3271
PFAM: Lantibiotic dehydratase domain protein; KEGG: stp:Strop_3045 lantibiotic dehydratase domain protein.
  
     0.478
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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