STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_1051KEGG: stp:Strop_2495 hypothetical protein. (82 aa)    
Predicted Functional Partners:
Sare_0487
PFAM: phosphopantetheine-binding; KEGG: ttj:TTHA0414 acyl carrier protein.
     
  0.900
Sare_2679
KEGG: stp:Strop_2495 hypothetical protein.
     
 
0.900
Sare_3012
KEGG: stp:Strop_4146 hypothetical protein.
     
  0.900
Sare_3057
PFAM: phosphopantetheine-binding; KEGG: stp:Strop_0682 phosphopantetheine-binding.
     
  0.900
Sare_3062
KEGG: stp:Strop_0677 hypothetical protein.
     
  0.900
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
     
  0.900
Sare_4562
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; Methyltransferase type 11; Methyltransferase type 12; KEGG: mxa:MXAN_3779 non-ribosomal peptide synthetase/polyketide synthase.
  
 
 0.852
Sare_2072
Beta-ketoacyl synthase; PFAM: Thioesterase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Non-ribosomal peptide synthetase; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: stp:Strop_2654 beta-ketoacyl synthase.
  
 
 0.781
Sare_2407
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: sde:Sde_3725 polyketide synthase modules and related proteins-like.
  
 
 0.781
Sare_3620
PFAM: Acyl transferase; KEGG: stp:Strop_3378 acyl transferase domain protein.
  
 0.724
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.