STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_1102KEGG: stp:Strop_1209 hypothetical protein. (144 aa)    
Predicted Functional Partners:
Sare_0874
KEGG: stp:Strop_0932 hypothetical protein.
  
     0.648
Sare_4473
KEGG: stp:Strop_4074 hypothetical protein.
  
     0.627
Sare_4474
KEGG: stp:Strop_4075 hypothetical protein.
  
     0.600
Sare_5073
KEGG: stp:Strop_3165 hypothetical protein.
  
     0.578
Sare_0161
KEGG: stp:Strop_0153 hypothetical protein.
  
     0.570
Sare_1101
KEGG: stp:Strop_1208 hypothetical protein.
       0.567
Sare_2283
PFAM: sulfatase; KEGG: stp:Strop_2135 sulfatase.
  
     0.554
Sare_1132
KEGG: stp:Strop_1242 hypothetical protein.
  
     0.542
Sare_3869
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: stp:Strop_3490 glyoxalase/bleomycin resistance protein/dioxygenase.
  
     0.539
Sare_3267
Tetratricopeptide TPR_4; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: stp:Strop_3041 tetratricopeptide TPR_4.
  
     0.535
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.