STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_1141Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: stp:Strop_1252 regulatory protein, TetR. (218 aa)    
Predicted Functional Partners:
Sare_1142
PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: stp:Strop_1253 monooxygenase, FAD-binding.
 
     0.928
Sare_1480
PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: stp:Strop_1538 cytochrome c biogenesis protein, transmembrane region.
  
     0.542
Sare_2757
Acyltransferase 3; KEGG: stp:Strop_0262 acyltransferase 3.
  
     0.517
Sare_0176
KEGG: stp:Strop_0167 hypothetical protein.
  
     0.509
Sare_1140
KEGG: stp:Strop_1251 hypothetical protein.
       0.504
Sare_1143
KEGG: stp:Strop_1254 hypothetical protein.
       0.503
Sare_2499
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: stp:Strop_2354 regulatory protein, TetR.
  
   
 0.459
Sare_0612
Recombinase; PFAM: Resolvase domain; Recombinase; KEGG: stp:Strop_2909 recombinase.
  
     0.420
Sare_3017
PFAM: A-factor biosynthesis repeat-containing protein; KEGG: stp:Strop_4151 hypothetical protein.
  
     0.418
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.