STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_1203PFAM: peptidase M23B; KEGG: stp:Strop_1314 peptidase M23B. (214 aa)    
Predicted Functional Partners:
Sare_1202
KEGG: stp:Strop_1313 hypothetical protein.
 
     0.613
rnhB
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
       0.513
Sare_1204
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; KEGG: rha:RHA1_ro08705 probable transcriptional regulator, ArsR family.
       0.442
Sare_1205
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: stp:Strop_2682 activator of HSP90 ATPase 1 family protein.
       0.442
Sare_1206
PFAM: bifunctional deaminase-reductase domain protein; KEGG: stp:Strop_2683 bifunctional deaminase-reductase domain protein.
       0.442
Sare_1200
TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: stp:Strop_1311 signal peptidase I; Belongs to the peptidase S26 family.
  
    0.400
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.