STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_1206PFAM: bifunctional deaminase-reductase domain protein; KEGG: stp:Strop_2683 bifunctional deaminase-reductase domain protein. (221 aa)    
Predicted Functional Partners:
Sare_1205
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: stp:Strop_2682 activator of HSP90 ATPase 1 family protein.
 
     0.945
Sare_1204
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; KEGG: rha:RHA1_ro08705 probable transcriptional regulator, ArsR family.
 
     0.885
Sare_2115
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: lic:LIC10664 hypothetical protein.
 
     0.512
Sare_4667
KEGG: cbu:CBU_1950 hypothetical protein.
 
     0.453
Sare_1203
PFAM: peptidase M23B; KEGG: stp:Strop_1314 peptidase M23B.
       0.442
Sare_2999
PFAM: extracellular solute-binding protein family 1; KEGG: sco:SCO0065 putative extracellular binding protein.
  
     0.404
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.