STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_1263PFAM: protein of unknown function DUF1205; KEGG: stp:Strop_2220 protein of unknown function DUF1205. (387 aa)    
Predicted Functional Partners:
Sare_2340
PFAM: NDP-hexose 23-dehydratase; KEGG: sma:SAV950 dTDP-4-keto-6-deoxy-L-hexose2,3-dehydratase.
 
     0.710
Sare_2025
PFAM: NDP-hexose 23-dehydratase; KEGG: sma:SAV950 dTDP-4-keto-6-deoxy-L-hexose2,3-dehydratase.
 
     0.698
Sare_1267
PFAM: NDP-hexose 23-dehydratase; KEGG: sen:SACE_0717 NDP-4-keto-6-deoxy-glucose 2,3-dehydratase.
 
     0.697
Sare_4562
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; Methyltransferase type 11; Methyltransferase type 12; KEGG: mxa:MXAN_3779 non-ribosomal peptide synthetase/polyketide synthase.
  
  
 0.585
Sare_3156
Beta-ketoacyl synthase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: sma:SAV419 modular polyketide synthase.
 
  
 0.453
Sare_0010
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: sen:SACE_1141 transcriptional regulator, XRE family.
  
     0.443
Sare_1247
Beta-ketoacyl synthase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: stp:Strop_2768 beta-ketoacyl synthase.
 
  
 0.426
Sare_3690
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: sen:SACE_1141 transcriptional regulator, XRE family.
  
     0.406
Sare_1262
KEGG: mul:MUL_2011 conserved polyketide synthase associated protein PapA5.
       0.405
Sare_2735
PFAM: protein of unknown function DUF1486; KEGG: mav:MAV_2173 hypothetical protein.
  
     0.400
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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