STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_1276PFAM: DoxX family protein; KEGG: stp:Strop_2325 DoxX family protein. (117 aa)    
Predicted Functional Partners:
Sare_1275
PFAM: ROK family protein; KEGG: sen:SACE_2869 RifN AHBA kinase.
       0.773
Sare_4199
KEGG: stp:Strop_3808 hypothetical protein.
  
     0.623
aroQ
3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
       0.535
Sare_3869
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: stp:Strop_3490 glyoxalase/bleomycin resistance protein/dioxygenase.
 
     0.522
Sare_1456
KEGG: stp:Strop_1491 hypothetical protein.
  
     0.519
Sare_1274
PFAM: UBA/THIF-type NAD/FAD binding protein; Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: fal:FRAAL0918 aminoquinate/shkimate dehydrogenase.
       0.509
Sare_1457
KEGG: stp:Strop_1495 hypothetical protein.
  
     0.488
Sare_3295
PFAM: protein of unknown function DUF692; Xylose isomerase domain protein TIM barrel; KEGG: stp:Strop_3068 protein of unknown function DUF692.
  
  
 0.486
Sare_0874
KEGG: stp:Strop_0932 hypothetical protein.
  
     0.474
Sare_0127
KEGG: stp:Strop_0122 hypothetical protein.
  
     0.470
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.