STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_1288KEGG: bja:blr2149 hypothetical protein. (531 aa)    
Predicted Functional Partners:
Sare_1287
PFAM: Terpene synthase metal-binding domain protein.
 
   
 0.973
Sare_1286
PFAM: cytochrome P450; KEGG: mxa:MXAN_2304 cytochrome P450 family protein.
 
 
 
 0.859
Sare_1289
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; Nitrate and nitrite sensing domain protein; KEGG: sma:SAV1582 sensor-like histidine kinase.
 
     0.786
Sare_4392
PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO5698 hypothetical protein.
  
     0.695
Sare_4228
KEGG: stp:Strop_3838 hypothetical protein.
  
     0.558
Sare_0313
PFAM: GCN5-related N-acetyltransferase; KEGG: stp:Strop_0270 GCN5-related N-acetyltransferase.
  
     0.555
Sare_2392
KEGG: stp:Strop_2273 hypothetical protein.
  
     0.553
Sare_4438
KEGG: stp:Strop_4045 hypothetical protein.
  
     0.548
Sare_4994
KEGG: stp:Strop_4480 hypothetical protein.
  
     0.480
Sare_4931
PFAM: Squalene/phytoene synthase; KEGG: stp:Strop_4441 squalene/phytoene synthase.
  
  
 0.460
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.