STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_1295PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: stp:Strop_1345 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase. (233 aa)    
Predicted Functional Partners:
Sare_2712
Transcriptional regulator, CdaR; KEGG: stp:Strop_2531 hypothetical protein.
 
     0.501
Sare_3118
KEGG: stp:Strop_2918 hypothetical protein.
  
     0.490
Sare_1294
PFAM: Clp domain protein; KEGG: stp:Strop_1344 Clp N terminal domain protein.
  
  
 0.469
Sare_2450
PFAM: UbiC transcription regulator-associated domain protein; KEGG: stp:Strop_2328 UbiC transcription regulator-associated domain protein.
  
     0.463
Sare_2329
PFAM: amine oxidase; KEGG: rrs:RoseRS_2594 amine oxidase.
  
  
 0.448
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
   
 
 0.421
Sare_3987
PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: stp:Strop_3606 arginase/agmatinase/formiminoglutamase; Belongs to the arginase family.
  
 0.402
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.