STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_1397KEGG: stp:Strop_1433 hypothetical protein. (572 aa)    
Predicted Functional Partners:
Sare_3280
PFAM: Lantibiotic dehydratase domain protein; KEGG: stp:Strop_3054 lantibiotic dehydratase domain protein.
  
     0.773
Sare_0105
KEGG: stp:Strop_0106 hypothetical protein.
  
     0.772
Sare_3271
PFAM: Lantibiotic dehydratase domain protein; KEGG: stp:Strop_3045 lantibiotic dehydratase domain protein.
  
     0.771
Sare_0936
KEGG: stp:Strop_1435 hypothetical protein.
 
     0.769
Sare_3272
PFAM: Lantibiotic dehydratase domain protein; KEGG: stp:Strop_3046 lantibiotic dehydratase domain protein.
  
     0.769
Sare_3349
PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: stp:Strop_3119 peptidase S1 and S6, chymotrypsin/Hap.
  
     0.768
Sare_0937
KEGG: stp:Strop_1436 hypothetical protein.
  
     0.766
Sare_3017
PFAM: A-factor biosynthesis repeat-containing protein; KEGG: stp:Strop_4151 hypothetical protein.
  
     0.765
Sare_1645
SMART: LamG domain protein jellyroll fold domain protein; KEGG: stp:Strop_1053 LamG domain protein jellyroll fold domain protein.
  
     0.763
Sare_3274
PFAM: Lantibiotic dehydratase domain protein; KEGG: stp:Strop_3048 lantibiotic dehydratase domain protein.
  
     0.763
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.