STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_1402KEGG: stp:Strop_1444 hypothetical protein. (268 aa)    
Predicted Functional Partners:
miaA
tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
       0.826
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
       0.826
Sare_1401
PFAM: protein of unknown function DUF349; KEGG: stp:Strop_1443 protein of unknown function DUF349.
       0.568
Sare_2969
PFAM: protein of unknown function DUF397; KEGG: stp:Strop_1517 protein of unknown function DUF397.
  
     0.494
Sare_0600
PFAM: helix-turn-helix domain protein; KEGG: stp:Strop_1133 helix-turn-helix domain protein.
  
     0.483
Sare_2601
PFAM: protein of unknown function DUF397; KEGG: stp:Strop_2448 protein of unknown function DUF397.
  
     0.478
Sare_3829
KEGG: stp:Strop_3450 hypothetical protein.
  
     0.462
Sare_3856
PFAM: protein of unknown function DUF397; KEGG: stp:Strop_3476 protein of unknown function DUF397.
  
     0.461
Sare_1378
KEGG: stp:Strop_1415 hypothetical protein.
  
     0.457
Sare_0853
PFAM: lipolytic protein G-D-S-L family; KEGG: stp:Strop_0910 lipolytic enzyme, G-D-S-L family.
  
     0.438
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.