STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_1417KEGG: hch:HCH_03235 hypothetical protein. (100 aa)    
Predicted Functional Partners:
Sare_1416
PFAM: regulatory protein TetR; KEGG: hch:HCH_03234 transcriptional regulator.
 
     0.946
Sare_1415
PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: bch:Bcen2424_1240 NADH:flavin oxidoreductase/NADH oxidase.
       0.778
Sare_3392
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: stp:Strop_3167 ferredoxin-dependent glutamate synthase.
       0.694
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
       0.584
Sare_2084
KEGG: sen:SACE_0356 putative hydrolase.
  
     0.474
Sare_1418
PFAM: beta-lactamase; KEGG: stp:Strop_1457 beta-lactamase.
       0.456
Sare_1872
PFAM: phosphoribosyl-ATP pyrophosphohydrolase; KEGG: stp:Strop_1879 phosphoribosyl-ATP pyrophosphohydrolase; Belongs to the PRA-PH family.
  
    0.422
Sare_1749
TIGRFAM: phosphoheptose isomerase; PFAM: sugar isomerase (SIS); KEGG: stp:Strop_1763 phosphoheptose isomerase.
   
    0.402
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.