STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_1529PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: stp:Strop_1578 ATP-binding region, ATPase domain protein domain protein. (573 aa)    
Predicted Functional Partners:
Sare_4523
GAF sensor hybrid histidine kinase; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: stp:Strop_4103 ATP-binding region, ATPase domain protein domain protein.
  
 
 0.960
Sare_1528
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: stp:Strop_1577 response regulator receiver.
 
 
 0.845
Sare_1530
KEGG: stp:Strop_1579 hypothetical protein.
 
  
 0.839
Sare_3511
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: stp:Strop_3279 response regulator receiver.
 
 
 0.764
Sare_0423
PFAM: regulatory protein LuxR; response regulator receiver; KEGG: stp:Strop_0353 two component transcriptional regulator, LuxR family.
 
 
 0.735
Sare_2136
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: sma:SAV6671 two-component system response regulator.
 
 
 0.733
Sare_2352
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: stp:Strop_2235 regulatory protein, LuxR.
 
 
 0.685
Sare_1782
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: stp:Strop_1796 response regulator receiver.
 
 
 0.667
Sare_4214
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; Sigma-70 region 4 type 2; KEGG: stp:Strop_3824 response regulator receiver.
 
 
 0.663
Sare_1603
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: stp:Strop_0395 two component transcriptional regulator, LuxR family.
 
 
 0.625
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.