STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_1629PFAM: bifunctional deaminase-reductase domain protein; KEGG: stp:Strop_1705 bifunctional deaminase-reductase domain protein. (185 aa)    
Predicted Functional Partners:
Sare_4109
PFAM: bifunctional deaminase-reductase domain protein; KEGG: stp:Strop_3728 bifunctional deaminase-reductase domain protein.
  
     0.646
Sare_1631
Sulphate transporter; PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: stp:Strop_1646 sulphate transporter.
       0.536
Sare_1630
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; KEGG: stp:Strop_1645 regulatory protein, MerR.
       0.531
Sare_4882
PFAM: protein of unknown function DUF574; KEGG: sma:SAV7303 hypothetical protein.
  
     0.510
Sare_3882
PFAM: protein of unknown function DUF574; KEGG: ana:alr7253 hypothetical protein.
  
     0.494
Sare_2943
PFAM: bifunctional deaminase-reductase domain protein; KEGG: aau:AAur_0949 hypothetical protein.
  
     0.431
Sare_2108
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: stp:Strop_2048 activator of HSP90 ATPase 1 family protein.
 
     0.422
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.