STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_1632PFAM: Carbohydrate-binding family V/XII; chitin-binding domain 3 protein; KEGG: stp:Strop_1647 chitin-binding, domain 3 protein. (338 aa)    
Predicted Functional Partners:
Sare_3485
Chitinase; KEGG: stp:Strop_3258 glycoside hydrolase, family 18; PFAM: glycoside hydrolase family 18; cellulose-binding family II; SMART: chitinase II; Belongs to the glycosyl hydrolase 18 family.
   
 0.773
Sare_3186
PFAM: glycoside hydrolase family 18; cellulose-binding family II; SMART: chitinase II; KEGG: stp:Strop_2965 cellulose-binding, family II; Belongs to the glycosyl hydrolase 18 family.
 
  
 0.742
Sare_0075
PFAM: peptidase M4 thermolysin; Proprotein convertase P; peptidase M20; peptidase M28; Peptidase M4 thermolysin; KEGG: sco:SCO1226 bifunctional protein.
  
  
 0.686
Sare_1633
KEGG: stp:Strop_1648 hypothetical protein.
 
     0.646
Sare_2420
PFAM: Erythromycin esterase; KEGG: stp:Strop_2296 erythromycin esterase.
  
     0.526
Sare_3263
PFAM: cellulose-binding family II; chitin-binding domain 3 protein; KEGG: stp:Strop_3037 chitin-binding, domain 3 protein.
  
     0.479
Sare_1931
KEGG: stp:Strop_0067 hypothetical protein.
  
     0.477
Sare_3037
PFAM: peptidase M7 snapalysin; peptidase S1 and S6 chymotrypsin/Hap; KEGG: stp:Strop_2873 peptidase S1 and S6, chymotrypsin/Hap.
  
     0.473
Sare_1645
SMART: LamG domain protein jellyroll fold domain protein; KEGG: stp:Strop_1053 LamG domain protein jellyroll fold domain protein.
  
     0.462
Sare_2253
PFAM: LVIVD repeat protein; KEGG: stp:Strop_2110 LVIVD repeat protein.
  
     0.427
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.