STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_1633KEGG: stp:Strop_1648 hypothetical protein. (191 aa)    
Predicted Functional Partners:
Sare_1632
PFAM: Carbohydrate-binding family V/XII; chitin-binding domain 3 protein; KEGG: stp:Strop_1647 chitin-binding, domain 3 protein.
 
     0.646
Sare_3069
KEGG: stp:Strop_0625 glycosyl hydrolase, BNR repeat-containing protein.
 
     0.611
Sare_1825
PFAM: lipopolysaccharide biosynthesis protein; KEGG: stp:Strop_1834 lipopolysaccharide biosynthesis protein.
  
     0.546
Sare_1829
KEGG: stp:Strop_1838 hypothetical protein.
  
     0.492
Sare_3280
PFAM: Lantibiotic dehydratase domain protein; KEGG: stp:Strop_3054 lantibiotic dehydratase domain protein.
  
     0.471
Sare_3272
PFAM: Lantibiotic dehydratase domain protein; KEGG: stp:Strop_3046 lantibiotic dehydratase domain protein.
  
     0.464
Sare_0105
KEGG: stp:Strop_0106 hypothetical protein.
  
     0.458
Sare_3271
PFAM: Lantibiotic dehydratase domain protein; KEGG: stp:Strop_3045 lantibiotic dehydratase domain protein.
  
     0.458
Sare_0183
PFAM: Abortive infection protein; KEGG: stp:Strop_0170 abortive infection protein.
  
     0.452
Sare_1397
KEGG: stp:Strop_1433 hypothetical protein.
  
     0.445
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.