STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_1641KEGG: stp:Strop_1656 hypothetical protein. (198 aa)    
Predicted Functional Partners:
Sare_1642
KEGG: stp:Strop_1657 hypothetical protein.
 
     0.958
Sare_1640
PFAM: Rieske [2Fe-2S] domain protein; KEGG: stp:Strop_1655 Rieske (2Fe-2S) domain protein.
       0.800
Sare_1643
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: stp:Strop_1658 adenylyl cyclase class-3/4/guanylyl cyclase.
 
     0.698
Sare_1638
PFAM: GTP-binding protein HSR1-related; KEGG: stp:Strop_1653 GTP-binding protein, HSR1-related.
 
     0.621
Sare_1639
PFAM: Dynamin family protein; GTP-binding protein HSR1-related; KEGG: stp:Strop_1654 dynamin family protein.
 
     0.605
Sare_4892
KEGG: stp:Strop_4418 hypothetical protein.
  
     0.582
Sare_3827
PFAM: acyltransferase 3; KEGG: stp:Strop_3448 acyltransferase 3.
  
     0.539
Sare_2916
PFAM: acyltransferase 3; KEGG: stp:Strop_2884 acyltransferase 3.
  
     0.509
Sare_1644
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: stp:Strop_1659 cyclic nucleotide-binding.
       0.484
Sare_2935
Hypothetical protein.
  
     0.416
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.