STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_1669KEGG: kra:Krad_3740 secreted protein. (622 aa)    
Predicted Functional Partners:
Sare_4887
PFAM: coagulation factor 5/8 type domain protein; KEGG: stp:Strop_4412 coagulation factor 5/8 type domain protein.
   
 0.891
Sare_3485
Chitinase; KEGG: stp:Strop_3258 glycoside hydrolase, family 18; PFAM: glycoside hydrolase family 18; cellulose-binding family II; SMART: chitinase II; Belongs to the glycosyl hydrolase 18 family.
 
 
 
 0.870
Sare_3186
PFAM: glycoside hydrolase family 18; cellulose-binding family II; SMART: chitinase II; KEGG: stp:Strop_2965 cellulose-binding, family II; Belongs to the glycosyl hydrolase 18 family.
 
  
 0.676
Sare_4899
PFAM: Ricin B lectin; glycoside hydrolase family 12; KEGG: stp:Strop_4424 glycoside hydrolase, family 5; Belongs to the glycosyl hydrolase 12 (cellulase H) family.
 
   
 0.618
Sare_0075
PFAM: peptidase M4 thermolysin; Proprotein convertase P; peptidase M20; peptidase M28; Peptidase M4 thermolysin; KEGG: sco:SCO1226 bifunctional protein.
 
  
 0.610
Sare_2410
PFAM: glycoside hydrolase family 5; cellulose-binding family II; KEGG: stp:Strop_2285 glycoside hydrolase, family 5.
 
   
 0.560
Sare_3180
PFAM: glycoside hydrolase family 48; PKD domain containing protein; cellulose-binding family II; KEGG: stp:Strop_2957 glycoside hydrolase, family 48.
  
   
 0.556
Sare_3263
PFAM: cellulose-binding family II; chitin-binding domain 3 protein; KEGG: stp:Strop_3037 chitin-binding, domain 3 protein.
 
  
 0.529
Sare_3983
PFAM: glycoside hydrolase family 6; cellulose-binding family II; KEGG: stp:Strop_3602 glycoside hydrolase, family 6; Belongs to the glycosyl hydrolase family 6.
  
   
 0.524
Sare_4050
PFAM: glycoside hydrolase family 16; Carbohydrate binding family 6; SMART: cellulose binding type IV; KEGG: stp:Strop_3674 carbohydrate binding family 6.
 
   
 0.522
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.