STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_1672PFAM: alpha/beta hydrolase fold; KEGG: stp:Strop_1678 hypothetical protein. (288 aa)    
Predicted Functional Partners:
Sare_1673
KEGG: stp:Strop_1679 hypothetical protein.
 
     0.555
Sare_1456
KEGG: stp:Strop_1491 hypothetical protein.
  
     0.480
Sare_3559
KEGG: stp:Strop_3325 hypothetical protein.
  
     0.472
Sare_1457
KEGG: stp:Strop_1495 hypothetical protein.
  
     0.463
Sare_4474
KEGG: stp:Strop_4075 hypothetical protein.
  
     0.463
Sare_3869
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: stp:Strop_3490 glyoxalase/bleomycin resistance protein/dioxygenase.
  
     0.427
Sare_4537
KEGG: stp:Strop_4116 hypothetical protein.
  
     0.410
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.