STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_1673KEGG: stp:Strop_1679 hypothetical protein. (418 aa)    
Predicted Functional Partners:
Sare_0356
PFAM: Lantibiotic dehydratase domain protein; KEGG: mxa:MXAN_3624 hypothetical protein.
  
     0.712
Sare_0360
PFAM: Lantibiotic dehydratase domain protein; KEGG: mxa:MXAN_3624 hypothetical protein.
  
     0.690
Sare_0180
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: sma:SAV247 hypothetical protein.
  
     0.616
Sare_1672
PFAM: alpha/beta hydrolase fold; KEGG: stp:Strop_1678 hypothetical protein.
 
     0.555
Sare_4843
Transcriptional regulator, SARP family; PFAM: transcriptional regulator domain protein; transcriptional activator domain; KEGG: sen:SACE_5446 hypothetical protein.
  
     0.524
Sare_3185
PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: stp:Strop_1725 monooxygenase, FAD-binding.
  
     0.471
Sare_4854
Transcriptional regulator, SARP family; PFAM: transcriptional regulator domain protein; transcriptional activator domain; KEGG: stp:Strop_2453 hypothetical protein.
  
     0.462
Sare_3156
Beta-ketoacyl synthase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: sma:SAV419 modular polyketide synthase.
 
  
 0.461
Sare_4993
KEGG: stp:Strop_0487 hypothetical protein.
  
 
   0.460
Sare_4899
PFAM: Ricin B lectin; glycoside hydrolase family 12; KEGG: stp:Strop_4424 glycoside hydrolase, family 5; Belongs to the glycosyl hydrolase 12 (cellulase H) family.
 
 
 0.450
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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