STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_1740PFAM: cyclase/dehydrase; KEGG: stp:Strop_1754 cyclase/dehydrase. (153 aa)    
Predicted Functional Partners:
Sare_1741
KEGG: stp:Strop_1755 hypothetical protein.
       0.653
Sare_1739
KEGG: stp:Strop_1753 hypothetical protein.
       0.602
Sare_1742
KEGG: stp:Strop_1756 hypothetical protein.
 
     0.551
Sare_4336
KEGG: stp:Strop_3944 hypothetical protein.
 
     0.537
Sare_1748
PFAM: glycosyl transferase group 1; KEGG: stp:Strop_1762 glycosyl transferase, group 1.
  
     0.499
Sare_1753
KEGG: stp:Strop_1767 hypothetical protein.
 
     0.486
Sare_1747
KEGG: stp:Strop_1761 hypothetical protein.
  
     0.482
Sare_1752
PFAM: glycosyl transferase family 9; KEGG: stp:Strop_1766 glycosyl transferase, family 9.
  
     0.467
Sare_4362
PFAM: glycosyl transferase family 9; KEGG: stp:Strop_3977 glycosyl transferase, family 9.
  
     0.467
Sare_4361
PFAM: glycosyl transferase family 2; KEGG: stp:Strop_3976 glycosyl transferase, family 2.
  
     0.463
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.