STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_1808PFAM: beta-lactamase domain protein; KEGG: stp:Strop_1818 beta-lactamase domain protein. (238 aa)    
Predicted Functional Partners:
Sare_2225
PFAM: beta-lactamase domain protein; SMART: Rhodanese domain protein; KEGG: stp:Strop_2086 beta-lactamase domain protein.
  
0.913
Sare_2892
PFAM: beta-lactamase domain protein; SMART: Rhodanese domain protein; KEGG: stp:Strop_1960 beta-lactamase domain protein.
  
0.913
Sare_3196
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: stp:Strop_2972 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
  
 0.912
Sare_1999
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
     
  0.900
Sare_1809
Histidine--tRNA ligase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; KEGG: stp:Strop_1819 histidine--tRNA ligase.
       0.861
Sare_1810
Hypothetical protein.
       0.608
Sare_1811
PFAM: fatty acid desaturase type 2; KEGG: stp:Strop_1820 fatty acid desaturase, type 2.
       0.608
Sare_1807
PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: stp:Strop_1816 peptidyl-prolyl cis-trans isomerase, cyclophilin type.
       0.587
Sare_1806
PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: stp:Strop_1816 peptidyl-prolyl cis-trans isomerase, cyclophilin type.
       0.538
aspS
aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
       0.522
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.