STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_1813Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; KEGG: stp:Strop_1822 regulatory protein, ArsR. (198 aa)    
Predicted Functional Partners:
Sare_1814
PFAM: major facilitator superfamily MFS_1; KEGG: stp:Strop_1823 major facilitator superfamily MFS_1.
 
     0.903
Sare_2593
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; KEGG: stp:Strop_2438 regulatory protein, LuxR.
  
   
 0.633
Sare_1314
PFAM: protein of unknown function DUF664; KEGG: nca:Noca_1196 protein of unknown function DUF664.
  
     0.632
Sare_1183
PFAM: protein of unknown function DUF664; KEGG: stp:Strop_1293 protein of unknown function DUF664.
  
     0.602
Sare_1382
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; KEGG: sma:SAV86 erythropoiesis-stimulating protein.
  
   
 0.597
Sare_1815
PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: stp:Strop_1824 AAA ATPase, central domain protein.
       0.509
Sare_2899
PFAM: protein of unknown function DUF664; KEGG: stp:Strop_1618 protein of unknown function DUF664.
  
     0.497
Sare_1586
PFAM: GCN5-related N-acetyltransferase; KEGG: stp:Strop_3779 GCN5-related N-acetyltransferase.
  
     0.473
Sare_1466
KEGG: stp:Strop_1512 hypothetical protein.
  
     0.467
aspS
aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
       0.467
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.