STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_1816KEGG: stp:Strop_1825 hypothetical protein. (221 aa)    
Predicted Functional Partners:
Sare_2410
PFAM: glycoside hydrolase family 5; cellulose-binding family II; KEGG: stp:Strop_2285 glycoside hydrolase, family 5.
    
 
 0.792
Sare_1817
KEGG: stp:Strop_1826 hypothetical protein.
       0.539
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
       0.489
Sare_1818
KEGG: stp:Strop_1827 hypothetical protein.
       0.460
Sare_1820
Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
       0.405
Sare_0044
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Proprotein convertase P; proteinase inhibitor I9 subtilisin propeptide; KEGG: stp:Strop_0039 peptidase S8 and S53, subtilisin, kexin, sedolisin.
  
 
 0.401
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.