STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_1827KEGG: stp:Strop_1836 hypothetical protein. (522 aa)    
Predicted Functional Partners:
Sare_1826
KEGG: stp:Strop_1835 hypothetical protein.
 
  
 0.980
Sare_1828
PFAM: sulfotransferase; KEGG: stp:Strop_1837 sulfotransferase.
 
     0.977
Sare_1825
PFAM: lipopolysaccharide biosynthesis protein; KEGG: stp:Strop_1834 lipopolysaccharide biosynthesis protein.
 
  
 0.972
Sare_1829
KEGG: stp:Strop_1838 hypothetical protein.
 
     0.949
Sare_1823
KEGG: stp:Strop_1832 hypothetical protein.
 
    0.911
Sare_3974
PFAM: sugar transferase; KEGG: stp:Strop_3593 undecaprenyl-phosphate galactose phosphotransferase.
 
  
 0.878
Sare_1832
PFAM: glycosyl transferase family 2; KEGG: stp:Strop_1841 glycosyl transferase, family 2.
 
  
 0.846
Sare_1824
PFAM: transferase hexapeptide repeat containing protein; KEGG: stp:Strop_1833 transferase hexapeptide repeat containing protein.
  
  
 0.832
Sare_0875
PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: stp:Strop_0933 UDP-glucose 6-dehydrogenase.
  
  
 0.823
Sare_2018
PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; KEGG: sen:SACE_0714 dTDP-4-deoxyglucose 3,5-epimerase.
  
  
 0.749
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.