Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Sare_1908PFAM: virulence factor MVIN family protein; KEGG: stp:Strop_1917 virulence factor MviN family protein. (567 aa)    
Predicted Functional Partners:
Sare_1907
KEGG: stp:Strop_1916 hypothetical protein.
 
   
 0.956
Sare_1910
KEGG: stp:Strop_1919 hypothetical protein.
 
     0.953
Sare_1909
PFAM: glycosyl transferase group 1; KEGG: stp:Strop_1918 glycosyl transferase, group 1.
 
     0.913
Sare_1906
KEGG: stp:Strop_1915 hypothetical protein.
 
   
 0.874
Sare_1905
PFAM: Thiamin pyrophosphokinase catalytic region; KEGG: stp:Strop_1914 thiamin pyrophosphokinase, catalytic region.
 
     0.807
Sare_2366
KEGG: stp:Strop_2248 hypothetical protein.
  
     0.740
pyrG
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.
   
   0.546
Sare_1912
PFAM: NUDIX hydrolase; KEGG: stp:Strop_1921 NUDIX hydrolase.
  
    0.522
Sare_3444
Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: stp:Strop_3218 penicillin-binding protein, transpeptidase.
  
   
 0.429
Sare_4523
GAF sensor hybrid histidine kinase; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: stp:Strop_4103 ATP-binding region, ATPase domain protein domain protein.
  
  
 0.425
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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