STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_1909PFAM: glycosyl transferase group 1; KEGG: stp:Strop_1918 glycosyl transferase, group 1. (386 aa)    
Predicted Functional Partners:
Sare_1910
KEGG: stp:Strop_1919 hypothetical protein.
 
     0.974
Sare_1907
KEGG: stp:Strop_1916 hypothetical protein.
 
  
 0.946
Sare_1908
PFAM: virulence factor MVIN family protein; KEGG: stp:Strop_1917 virulence factor MviN family protein.
 
     0.917
Sare_1906
KEGG: stp:Strop_1915 hypothetical protein.
 
     0.748
Sare_1905
PFAM: Thiamin pyrophosphokinase catalytic region; KEGG: stp:Strop_1914 thiamin pyrophosphokinase, catalytic region.
 
     0.677
Sare_2366
KEGG: stp:Strop_2248 hypothetical protein.
  
     0.599
Sare_1912
PFAM: NUDIX hydrolase; KEGG: stp:Strop_1921 NUDIX hydrolase.
  
    0.547
Sare_0875
PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: stp:Strop_0933 UDP-glucose 6-dehydrogenase.
 
  
 0.544
Sare_3514
PFAM: glycosyl transferase group 1; KEGG: stp:Strop_3282 glycosyl transferase, group 1.
  
     0.532
pyrG
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.
  
    0.509
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.