STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_1932PFAM: NUDIX hydrolase; KEGG: stp:Strop_0069 NUDIX hydrolase; Belongs to the Nudix hydrolase family. (221 aa)    
Predicted Functional Partners:
prs
Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
    
 0.902
Sare_4106
KEGG: stp:Strop_3725 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase.
    
 0.902
Sare_1221
PFAM: NUDIX hydrolase; KEGG: stp:Strop_0069 NUDIX hydrolase; Belongs to the Nudix hydrolase family.
  
  
 
0.900
Sare_1699
TIGRFAM: phosphoglucomutase, alpha-D-glucose phosphate-specific; PFAM: phosphoglucomutase/phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: stp:Strop_1701 phosphoglucomutase, alpha-D-glucose phosphate-specific.
     
  0.900
Sare_4804
PFAM: NUDIX hydrolase; KEGG: fal:FRAAL6419 hypothetical protein.
     
  0.900
Sare_1931
KEGG: stp:Strop_0067 hypothetical protein.
 
     0.794
Sare_1933
KEGG: stp:Strop_0070 hypothetical protein.
     
 0.792
Sare_1934
Hypothetical protein.
       0.783
Sare_4343
PFAM: peptidase M48 Ste24p; KEGG: stp:Strop_3958 peptidase M48, Ste24p.
  
     0.521
Sare_1828
PFAM: sulfotransferase; KEGG: stp:Strop_1837 sulfotransferase.
  
     0.469
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.