STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_1933KEGG: stp:Strop_0070 hypothetical protein. (124 aa)    
Predicted Functional Partners:
Sare_1932
PFAM: NUDIX hydrolase; KEGG: stp:Strop_0069 NUDIX hydrolase; Belongs to the Nudix hydrolase family.
     
 0.792
Sare_1934
Hypothetical protein.
       0.792
Sare_1931
KEGG: stp:Strop_0067 hypothetical protein.
 
     0.791
Sare_1929
PFAM: cell divisionFtsK/SpoIIIE; KEGG: sen:SACE_7023 hypothetical protein.
 
     0.768
Sare_4972
PFAM: SAF domain protein; KEGG: stp:Strop_4459 SAF domain.
 
  
 0.768
Sare_1926
PFAM: Bifunctional DNA primase/polymerase; KEGG: stp:Strop_0062 hypothetical protein.
 
     0.763
Sare_4524
PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: stp:Strop_4104 stage II sporulation E family protein.
   
    0.711
Sare_4523
GAF sensor hybrid histidine kinase; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: stp:Strop_4103 ATP-binding region, ATPase domain protein domain protein.
  
 
 0.700
Sare_1924
KEGG: pna:Pnap_0963 hypothetical protein.
 
   
 0.672
Sare_1678
KEGG: stp:Strop_1683 hypothetical protein.
 
  
 0.648
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.