Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Sare_1944 | Sare_1945 | Hypothetical protein. | DNA-binding protein; KEGG: stp:Strop_0582 hypothetical protein. | 0.458 |
Sare_1944 | Sare_1946 | Hypothetical protein. | PFAM: Asparaginase/glutaminase; KEGG: stp:Strop_3001 asparaginase/glutaminase. | 0.458 |
Sare_1945 | Sare_1944 | DNA-binding protein; KEGG: stp:Strop_0582 hypothetical protein. | Hypothetical protein. | 0.458 |
Sare_1945 | Sare_1946 | DNA-binding protein; KEGG: stp:Strop_0582 hypothetical protein. | PFAM: Asparaginase/glutaminase; KEGG: stp:Strop_3001 asparaginase/glutaminase. | 0.797 |
Sare_1945 | Sare_1947 | DNA-binding protein; KEGG: stp:Strop_0582 hypothetical protein. | Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: tfu:Tfu_1244 helix-turn-helix motif. | 0.592 |
Sare_1946 | Sare_1944 | PFAM: Asparaginase/glutaminase; KEGG: stp:Strop_3001 asparaginase/glutaminase. | Hypothetical protein. | 0.458 |
Sare_1946 | Sare_1945 | PFAM: Asparaginase/glutaminase; KEGG: stp:Strop_3001 asparaginase/glutaminase. | DNA-binding protein; KEGG: stp:Strop_0582 hypothetical protein. | 0.797 |
Sare_1946 | Sare_1947 | PFAM: Asparaginase/glutaminase; KEGG: stp:Strop_3001 asparaginase/glutaminase. | Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: tfu:Tfu_1244 helix-turn-helix motif. | 0.581 |
Sare_1947 | Sare_1945 | Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: tfu:Tfu_1244 helix-turn-helix motif. | DNA-binding protein; KEGG: stp:Strop_0582 hypothetical protein. | 0.592 |
Sare_1947 | Sare_1946 | Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: tfu:Tfu_1244 helix-turn-helix motif. | PFAM: Asparaginase/glutaminase; KEGG: stp:Strop_3001 asparaginase/glutaminase. | 0.581 |