STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_1960PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: gvi:gll1470 probable peptidase. (610 aa)    
Predicted Functional Partners:
Sare_1961
PFAM: Creatininase; KEGG: sco:SCO6654 hypothetical protein.
       0.427
Sare_1962
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: sma:SAP1p37 putative DNA-binding protein.
       0.427
Sare_4146
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: stp:Strop_3764 peptidase S9, prolyl oligopeptidase active site domain protein.
  
     0.415
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.