STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_1964PFAM: Acetamidase/Formamidase; KEGG: mva:Mvan_0644 acetamidase/formamidase. (350 aa)    
Predicted Functional Partners:
Sare_0864
PFAM: Amidase; KEGG: stp:Strop_0921 amidase.
  
 
 0.917
Sare_3895
PFAM: Amidase; KEGG: stp:Strop_3520 amidase; Belongs to the amidase family.
  
 
 0.917
Sare_1963
PFAM: amino acid permease-associated region; KEGG: gka:GK2269 amino acid transporter.
 
     0.912
Sare_0238
PFAM: aldehyde dehydrogenase; KEGG: stp:Strop_0078 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 
  0.901
Sare_0771
PFAM: aldehyde dehydrogenase; KEGG: stp:Strop_0827 aldehyde dehydrogenase (NAD(+)); Belongs to the aldehyde dehydrogenase family.
   
 
  0.901
Sare_2802
PFAM: aldehyde dehydrogenase; KEGG: stp:Strop_2603 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 
  0.901
Sare_2696
TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; KEGG: sco:SCO7470 putative phenylacetic acid degradation protein PaaI.
     
  0.900
Sare_2804
PFAM: coenzyme A transferase; KEGG: stp:Strop_2605 coenzyme A transferase.
     
  0.900
Sare_2924
KEGG: stp:Strop_1716 scyllo-inosamine-4-phosphate amidinotransferase.
     
  0.900
Sare_1965
KEGG: sco:SCO4440 hypothetical protein.
  
    0.806
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.