STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_2001PFAM: major facilitator superfamily MFS_1; KEGG: stp:Strop_1625 major facilitator superfamily MFS_1. (434 aa)    
Predicted Functional Partners:
Sare_2002
Hypothetical protein; KEGG: rha:RHA1_ro02605 possible haloalkane dehalogenase.
       0.497
Sare_3127
PFAM: GCN5-related N-acetyltransferase; KEGG: stp:Strop_2924 hypothetical protein.
  
     0.492
Sare_0365
PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV3640 multidrug resistance protein.
  
     0.461
Sare_4122
PFAM: major facilitator superfamily MFS_1; KEGG: stp:Strop_3741 major facilitator superfamily MFS_1.
  
     0.438
Sare_3887
KEGG: stp:Strop_3512 GCN5-related N-acetyltransferase.
   
    0.429
Sare_3165
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: stp:Strop_2944 regulatory protein, TetR.
  
     0.406
Sare_2064
PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: stp:Strop_0656 major facilitator superfamily MFS_1.
  
     0.402
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.