Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Sare_2002Hypothetical protein; KEGG: rha:RHA1_ro02605 possible haloalkane dehalogenase. (154 aa)    
Predicted Functional Partners:
Sare_4184
Hypothetical protein; KEGG: osa:4335047 Os04g0165600; Belongs to the peptidase S26 family.
  
   
 0.547
Sare_2001
PFAM: major facilitator superfamily MFS_1; KEGG: stp:Strop_1625 major facilitator superfamily MFS_1.
       0.497
Sare_2003
KEGG: stt:t0405 hypothetical protein.
       0.495
Sare_2407
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: sde:Sde_3725 polyketide synthase modules and related proteins-like.
  
 0.431
Sare_0480
KEGG: ret:RHE_PE00204 hypothetical protein.
  
     0.402
Sare_4562
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; Methyltransferase type 11; Methyltransferase type 12; KEGG: mxa:MXAN_3779 non-ribosomal peptide synthetase/polyketide synthase.
   
 
 0.400
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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