STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_2028PFAM: O-methyltransferase family 2; KEGG: bja:blr7665 putative methyltransferase. (354 aa)    
Predicted Functional Partners:
Sare_2029
Beta-ketoacyl synthase; PFAM: phosphopantetheine-binding; Beta-ketoacyl synthase; Acyl transferase; KEGG: sen:SACE_5308 iterative type I polyketide synthase.
 
  
  0.971
Sare_2031
Tryptophan halogenase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: nfa:nfa21310 putative halogenase.
 
  
  0.951
Sare_2024
PFAM: cytochrome P450; KEGG: sen:SACE_3429 cytochrome P450 hydroxylase.
   
   0.793
Sare_2025
PFAM: NDP-hexose 23-dehydratase; KEGG: sma:SAV950 dTDP-4-keto-6-deoxy-L-hexose2,3-dehydratase.
       0.773
Sare_2026
Hypothetical protein.
       0.773
Sare_2027
PFAM: protein of unknown function DUF323; KEGG: sco:SCO7548 hypothetical protein.
       0.773
Sare_2030
PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: sen:SACE_5307 3-oxoacyl-ACP synthase III.
       0.569
Sare_2032
PFAM: cytochrome P450; KEGG: gvi:gll1942 cytochrome P-450 like protein.
   
   0.423
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.