STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_2125PFAM: Hemerythrin HHE cation binding domain protein; KEGG: sen:SACE_3582 hypothetical protein. (284 aa)    
Predicted Functional Partners:
Sare_2601
PFAM: protein of unknown function DUF397; KEGG: stp:Strop_2448 protein of unknown function DUF397.
  
     0.600
Sare_2128
PFAM: protein of unknown function DUF397; KEGG: stp:Strop_3657 protein of unknown function DUF397.
 
     0.588
Sare_1936
PFAM: isochorismatase hydrolase; KEGG: sco:SCP1.88c putative hydrolase.
 
 
 0.566
Sare_2933
PFAM: glycosyl transferase family 28; protein of unknown function DUF1205; KEGG: sen:SACE_3464 hypothetical protein.
 
     0.526
Sare_4858
PFAM: Carbohydrate-binding family V/XII; chitin-binding domain 3 protein; KEGG: stp:Strop_2456 chitin-binding, domain 3 protein.
  
     0.508
Sare_1483
PFAM: Carbohydrate-binding family V/XII; chitin-binding domain 3 protein; KEGG: stp:Strop_1647 chitin-binding, domain 3 protein.
  
     0.492
Sare_2112
PFAM: glycosyl transferase family 28; protein of unknown function DUF1205; KEGG: sen:SACE_0726 glycosyl transferase, NDP-D-desosamine : 3-L-mycarosyl erythronolide B.
 
     0.491
Sare_2312
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sco:SCO4671 LysR-family regulatory protein; Belongs to the LysR transcriptional regulatory family.
  
    0.486
Sare_0886
TIGRFAM: LPPG domain containing protein; PFAM: protein of unknown function UPF0052 and CofD; KEGG: stp:Strop_0944 LPPG domain containing protein.
 
   
 0.470
Sare_1596
KEGG: sco:SCO2868 hypothetical protein.
  
     0.469
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.