STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_2170PFAM: O-methyltransferase family 2; KEGG: yen:YE1418 putative O-methyltransferase. (332 aa)    
Predicted Functional Partners:
Sare_2032
PFAM: cytochrome P450; KEGG: gvi:gll1942 cytochrome P-450 like protein.
    
  0.908
Sare_2030
PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: sen:SACE_5307 3-oxoacyl-ACP synthase III.
     
  0.900
Sare_2171
PFAM: extracellular solute-binding protein family 5; KEGG: fra:Francci3_1641 extracellular solute-binding protein, family 5.
       0.773
Sare_2082
Methyltransferase type 12; PFAM: O-methyltransferase family 2; Methyltransferase type 12; KEGG: mxa:MXAN_0730 O-methyltransferase family protein.
  
     0.772
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.