STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_2182KEGG: ade:Adeh_0344 hypothetical protein. (223 aa)    
Predicted Functional Partners:
Sare_2180
KEGG: stp:Strop_2696 hypothetical protein.
       0.638
Sare_2181
Cystathionine gamma-synthase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: ade:Adeh_3707 cystathionine gamma-synthase.
       0.637
Sare_2176
PFAM: protein of unknown function DUF1702; KEGG: stp:Strop_2700 protein of unknown function DUF1702.
       0.634
Sare_2177
PFAM: ASPIC/UnbV domain protein; KEGG: stp:Strop_2699 ASPIC/UnbV domain protein.
  
    0.634
Sare_2178
KEGG: stp:Strop_2698 hypothetical protein.
       0.634
Sare_2179
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: stp:Strop_2697 beta-ketoacyl synthase.
       0.634
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.