STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_2187PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: ade:Adeh_0846 cysteine desulfurase, SufS subfamily. (422 aa)    
Predicted Functional Partners:
Sare_2185
Methyltransferase type 11; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: bra:BRADO4190 putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase.
  
 
  0.977
Sare_3305
TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: stp:Strop_3078 SUF system FeS assembly protein, NifU family.
 
 
 0.974
Sare_3307
KEGG: stp:Strop_3080 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.934
Sare_2039
PFAM: aminotransferase class V; KEGG: aav:Aave_1124 aminotransferase, class V.
  
  
 
0.929
Sare_3310
TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: stp:Strop_3083 FeS assembly protein SufB.
 
 
 0.906
Sare_2200
PFAM: homocysteine S-methyltransferase; KEGG: hha:Hhal_0392 homocysteine S-methyltransferase.
     
 0.903
Sare_2181
Cystathionine gamma-synthase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: ade:Adeh_3707 cystathionine gamma-synthase.
     
 0.902
Sare_3309
TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: stp:Strop_3082 FeS assembly protein SufD.
 
 
 0.902
Sare_2196
KEGG: mxa:MXAN_4412 hypothetical protein.
     
  0.900
Sare_2186
Hypothetical protein.
       0.773
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.