STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_2189KEGG: ace:Acel_1148 hypothetical protein. (459 aa)    
Predicted Functional Partners:
Sare_2188
PFAM: peptidase U62 modulator of DNA gyrase; KEGG: sco:SCO1816 hypothetical protein.
 
     0.951
Sare_4147
PFAM: peptidase U62 modulator of DNA gyrase; KEGG: stp:Strop_3765 peptidase U62, modulator of DNA gyrase.
 
     0.783
Sare_2185
Methyltransferase type 11; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: bra:BRADO4190 putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase.
       0.773
Sare_2186
Hypothetical protein.
       0.773
Sare_2187
PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: ade:Adeh_0846 cysteine desulfurase, SufS subfamily.
       0.773
Sare_2184
TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: nfa:nfa2070 putative glucose-1-phosphate thymidyltransferase.
       0.574
Sare_0341
PFAM: protein of unknown function DUF1416; KEGG: stp:Strop_0297 protein of unknown function DUF1416.
  
     0.439
Sare_1811
PFAM: fatty acid desaturase type 2; KEGG: stp:Strop_1820 fatty acid desaturase, type 2.
  
   
 0.427
Sare_2183
PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: sen:SACE_0962 CalU12.
       0.418
Sare_3300
KEGG: stp:Strop_3073 hypothetical protein.
  
     0.406
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.