STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_2219PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: stp:Strop_2076 oxidoreductase FAD-binding domain protein. (363 aa)    
Predicted Functional Partners:
Sare_2220
PFAM: fatty acid desaturase; KEGG: stp:Strop_2077 fatty acid desaturase.
 
 0.999
Sare_1811
PFAM: fatty acid desaturase type 2; KEGG: stp:Strop_1820 fatty acid desaturase, type 2.
  
 
 0.916
Sare_3391
TIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: stp:Strop_3166 glutamate synthase, NADH/NADPH, small subunit.
   
 0.903
Sare_2218
Putative transcriptional regulator, PucR family; KEGG: stp:Strop_2075 hypothetical protein.
 
     0.888
Sare_2407
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: sde:Sde_3725 polyketide synthase modules and related proteins-like.
   
 
 0.840
Sare_3156
Beta-ketoacyl synthase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: sma:SAV419 modular polyketide synthase.
  
 
 0.821
Sare_3305
TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: stp:Strop_3078 SUF system FeS assembly protein, NifU family.
  
 0.801
Sare_4951
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: sen:SACE_5532 iterative type I polyketide synthase.
   
 
 0.788
Sare_4056
PFAM: fatty acid desaturase; KEGG: stp:Strop_3679 fatty acid desaturase.
  
  
 0.787
Sare_1106
PFAM: aminotransferase class V; KEGG: stp:Strop_1213 aminotransferase, class V.
  
 0.705
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.