STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_2225PFAM: beta-lactamase domain protein; SMART: Rhodanese domain protein; KEGG: stp:Strop_2086 beta-lactamase domain protein. (470 aa)    
Predicted Functional Partners:
Sare_2892
PFAM: beta-lactamase domain protein; SMART: Rhodanese domain protein; KEGG: stp:Strop_1960 beta-lactamase domain protein.
 
0.972
Sare_3196
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: stp:Strop_2972 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
  
 0.921
Sare_1808
PFAM: beta-lactamase domain protein; KEGG: stp:Strop_1818 beta-lactamase domain protein.
  
0.913
Sare_1999
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
  
 
  0.908
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
   
 
 0.890
Sare_1889
PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; KEGG: fra:Francci3_1593 AMP-dependent synthetase and ligase.
  
 
 0.882
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
   
 
 0.879
rpsQ
Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
   0.876
Sare_4022
PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: stp:Strop_3640 low molecular weight phosphotyrosine protein phosphatase.
   
 
 0.859
rsmH
S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
   
   0.853
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.