STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_2230TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: stp:Strop_2089 diguanylate cyclase. (215 aa)    
Predicted Functional Partners:
Sare_1503
Diguanylate phosphodiesterase; PFAM: EAL domain protein; peptidase C14 caspase catalytic subunit p20; KEGG: tfu:Tfu_0610 PAS:GGDEF.
 
  
 0.842
Sare_4524
PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: stp:Strop_4104 stage II sporulation E family protein.
  
 
 0.669
Sare_4335
Diguanylate cyclase/phosphodiesterase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: stp:Strop_3943 diguanylate cyclase.
 
  
0.567
Sare_1318
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: stp:Strop_1361 diguanylate cyclase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
 
0.535
Sare_3513
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: stp:Strop_3281 diguanylate cyclase.
 
  
0.497
Sare_0870
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: stp:Strop_0927 diguanylate cyclase.
 
  
0.486
Sare_4523
GAF sensor hybrid histidine kinase; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: stp:Strop_4103 ATP-binding region, ATPase domain protein domain protein.
  
 
 0.474
Sare_2231
PFAM: protein of unknown function DUF397; KEGG: stp:Strop_2090 protein of unknown function DUF397.
       0.464
Sare_3827
PFAM: acyltransferase 3; KEGG: stp:Strop_3448 acyltransferase 3.
  
  
 0.400
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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