STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_2237PFAM: regulatory protein AsnC/Lrp family; KEGG: stp:Strop_2096 regulatory protein, AsnC/Lrp family. (168 aa)    
Predicted Functional Partners:
Sare_4510
PFAM: regulatory protein AsnC/Lrp family; KEGG: stp:Strop_4090 regulatory protein, AsnC/Lrp family.
  
     0.769
Sare_2396
PFAM: regulatory protein AsnC/Lrp family; regulatory protein ArsR; KEGG: stp:Strop_2275 regulatory protein, AsnC/Lrp family.
  
     0.766
Sare_0632
PFAM: regulatory protein AsnC/Lrp family; KEGG: stp:Strop_0657 putative transcriptional regulator, AsnC family.
  
     0.762
Sare_3907
PFAM: regulatory protein AsnC/Lrp family; KEGG: stp:Strop_3532 regulatory protein, AsnC/Lrp family.
  
     0.760
Sare_2240
PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: stp:Strop_2099 catalytic domain of components of various dehydrogenase complexes.
 
     0.640
Sare_2238
PFAM: dehydrogenase E1 component; KEGG: stp:Strop_2097 pyruvate dehydrogenase (acetyl-transferring).
       0.580
Sare_2239
PFAM: Transketolase central region; Transketolase domain protein; KEGG: stp:Strop_2098 transketolase, central region.
       0.580
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.