STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_2242PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: stp:Strop_2100 ErfK/YbiS/YcfS/YnhG family protein. (427 aa)    
Predicted Functional Partners:
Sare_4756
PFAM: peptidase S1 and S6 chymotrypsin/Hap; Colicin V production protein; KEGG: stp:Strop_4316 peptidase S1 and S6, chymotrypsin/Hap.
 
     0.657
Sare_1108
PFAM: Methionine synthase vitamin-B12 independent; KEGG: stp:Strop_1215 methionine synthase, vitamin-B12 independent.
  
     0.645
Sare_2243
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: mta:Moth_1498 anti-sigma-factor antagonist (STAS) domain protein.
       0.468
Sare_3577
KEGG: stp:Strop_3333 hypothetical protein.
  
     0.455
Sare_0432
KEGG: stp:Strop_0362 membrane-bound lytic murein transglycosylase B-like protein.
  
     0.426
Sare_3578
KEGG: stp:Strop_3333 hypothetical protein.
  
     0.421
Sare_4009
KEGG: stp:Strop_3627 hypothetical protein.
  
     0.413
Sare_0405
KEGG: stp:Strop_0338 hypothetical protein.
  
     0.410
Sare_5074
KEGG: stp:Strop_4559 hypothetical protein.
  
     0.409
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.