STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_2275KEGG: stp:Strop_2128 hypothetical protein. (282 aa)    
Predicted Functional Partners:
Sare_4710
KEGG: stp:Strop_4276 hypothetical protein.
  
     0.605
Sare_3128
KEGG: stp:Strop_2925 hypothetical protein.
  
     0.589
Sare_2248
KEGG: stp:Strop_2105 hypothetical protein.
  
     0.573
Sare_3461
KEGG: stp:Strop_3235 hypothetical protein.
  
     0.475
Sare_4134
TIGRFAM: succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: stp:Strop_3752 succinyl-diaminopimelate desuccinylase.
 
     0.445
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
 
    0.429
Sare_3797
KEGG: stp:Strop_3420 hypothetical protein.
  
     0.423
Sare_3619
Putative transcriptional regulator, PucR family; KEGG: stp:Strop_3377 hypothetical protein.
  
     0.411
Sare_3425
KEGG: stp:Strop_3199 hypothetical protein.
  
   
 0.409
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.