STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_2279PFAM: glycosyl transferase family 39; KEGG: stp:Strop_2132 glycosyl transferase, family 39. (700 aa)    
Predicted Functional Partners:
Sare_2280
PFAM: glycosyl transferase family 2; GtrA family protein; KEGG: stp:Strop_2133 glycosyl transferase, family 2.
 
  
 0.956
Sare_2278
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: stp:Strop_2131 ATP-binding region, ATPase domain protein domain protein.
 
     0.710
Sare_4562
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; Methyltransferase type 11; Methyltransferase type 12; KEGG: mxa:MXAN_3779 non-ribosomal peptide synthetase/polyketide synthase.
     
 0.685
Sare_2277
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: stp:Strop_2130 response regulator receiver.
 
     0.634
Sare_3827
PFAM: acyltransferase 3; KEGG: stp:Strop_3448 acyltransferase 3.
  
  
 0.463
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.