STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_2332Methyltransferase type 11; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rrs:RoseRS_3510 methyltransferase type 11. (279 aa)    
Predicted Functional Partners:
Sare_2331
PFAM: cytochrome P450; KEGG: art:Arth_1978 cytochrome P450.
   
   0.793
Sare_2330
KEGG: cvi:CV_3273 VioB - polyketide synthase.
  
   0.602
Sare_0237
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: stp:Strop_0211 methyltransferase type 11.
 
     0.586
Sare_2329
PFAM: amine oxidase; KEGG: rrs:RoseRS_2594 amine oxidase.
       0.580
Sare_2335
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
       0.544
Sare_2336
TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: stp:Strop_2222 dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
       0.544
Sare_2337
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: gur:Gura_4276 glutamine--scyllo-inositol transaminase; Belongs to the DegT/DnrJ/EryC1 family.
       0.540
Sare_2333
PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: bxe:Bxe_C1006 putative flavoprotein monooxygenase.
       0.539
Sare_2334
Hypothetical protein.
       0.539
Sare_2338
PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; KEGG: sma:SAV949 dTDP-4-keto-6-deoxyhexose 3,5-epimerase.
   
   0.407
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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